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Pyplot plot image with colormap and sequence of alpha



2019 Community Moderator ElectionHow to put the legend out of the plotSave plot to image file instead of displaying it using MatplotlibCreate a gray scale colormap with colorbar on PythonHow to generate random colors in matplotlib?How to make IPython notebook matplotlib plot inlineLogarithmic colormap in matplotlibPlotting an irregularly-spaced RGB image in Pythonuse matplotlib color map for color cycleSelecting a single color from a matplotlib colormap in JuilaHow to avoid automatic pseudo coloring in matplotlib.pyplot imshow()










1















With the imshow function from pyplot, I can plot an (M,N) size image, where each value in the (M,N) sized array is associated to a color from a colormap



import numpy as np
import matplotlib.pyplot as plt

A = np.random.rand(5,5)
plt.imshow(A, cmap='jet')
plt.colorbar()
plt.show()


I have an (2,M,N) sized array (let's call it B) that I would like to show. B[0] gives the hue and B[1] is the alpha. Here, B[0] would be the same as A in the first example.



I would like to write something like plt.imshow(B[0], cmap='jet', alpha=B[1]). But the value of the alpha has to be the same for the entire image, since the alpha option has to be a scalar or None



With imshow, I can also specify an (M,N,3) or an (M,N,4) array, where the value for R,G,B and alpha are given. However, I don't know how to get the RGB values from my initial (M,N) sized array A.




I tried setting the color with the HSV scheme from my values, then converting to RGB and plotting with those colors



from matplotlib import colors

B = np.random.rand(2,5,5)

hue = B[0]
sat = B[1]
val = np.ones(B[0].shape)

rgb = colors.hsv_to_rgb(np.array([hue, sat, val]).T)

plt.imshow(rgb)
plt.show()


But then, I don't know how to make a color bar from the actual values in B.




I'm going for something like this:
Expected result
where the vertical part of the colorbar shows the value in B[0] and the horizontal part of the colorbar shows the value in B[1].










share|improve this question


























    1















    With the imshow function from pyplot, I can plot an (M,N) size image, where each value in the (M,N) sized array is associated to a color from a colormap



    import numpy as np
    import matplotlib.pyplot as plt

    A = np.random.rand(5,5)
    plt.imshow(A, cmap='jet')
    plt.colorbar()
    plt.show()


    I have an (2,M,N) sized array (let's call it B) that I would like to show. B[0] gives the hue and B[1] is the alpha. Here, B[0] would be the same as A in the first example.



    I would like to write something like plt.imshow(B[0], cmap='jet', alpha=B[1]). But the value of the alpha has to be the same for the entire image, since the alpha option has to be a scalar or None



    With imshow, I can also specify an (M,N,3) or an (M,N,4) array, where the value for R,G,B and alpha are given. However, I don't know how to get the RGB values from my initial (M,N) sized array A.




    I tried setting the color with the HSV scheme from my values, then converting to RGB and plotting with those colors



    from matplotlib import colors

    B = np.random.rand(2,5,5)

    hue = B[0]
    sat = B[1]
    val = np.ones(B[0].shape)

    rgb = colors.hsv_to_rgb(np.array([hue, sat, val]).T)

    plt.imshow(rgb)
    plt.show()


    But then, I don't know how to make a color bar from the actual values in B.




    I'm going for something like this:
    Expected result
    where the vertical part of the colorbar shows the value in B[0] and the horizontal part of the colorbar shows the value in B[1].










    share|improve this question
























      1












      1








      1








      With the imshow function from pyplot, I can plot an (M,N) size image, where each value in the (M,N) sized array is associated to a color from a colormap



      import numpy as np
      import matplotlib.pyplot as plt

      A = np.random.rand(5,5)
      plt.imshow(A, cmap='jet')
      plt.colorbar()
      plt.show()


      I have an (2,M,N) sized array (let's call it B) that I would like to show. B[0] gives the hue and B[1] is the alpha. Here, B[0] would be the same as A in the first example.



      I would like to write something like plt.imshow(B[0], cmap='jet', alpha=B[1]). But the value of the alpha has to be the same for the entire image, since the alpha option has to be a scalar or None



      With imshow, I can also specify an (M,N,3) or an (M,N,4) array, where the value for R,G,B and alpha are given. However, I don't know how to get the RGB values from my initial (M,N) sized array A.




      I tried setting the color with the HSV scheme from my values, then converting to RGB and plotting with those colors



      from matplotlib import colors

      B = np.random.rand(2,5,5)

      hue = B[0]
      sat = B[1]
      val = np.ones(B[0].shape)

      rgb = colors.hsv_to_rgb(np.array([hue, sat, val]).T)

      plt.imshow(rgb)
      plt.show()


      But then, I don't know how to make a color bar from the actual values in B.




      I'm going for something like this:
      Expected result
      where the vertical part of the colorbar shows the value in B[0] and the horizontal part of the colorbar shows the value in B[1].










      share|improve this question














      With the imshow function from pyplot, I can plot an (M,N) size image, where each value in the (M,N) sized array is associated to a color from a colormap



      import numpy as np
      import matplotlib.pyplot as plt

      A = np.random.rand(5,5)
      plt.imshow(A, cmap='jet')
      plt.colorbar()
      plt.show()


      I have an (2,M,N) sized array (let's call it B) that I would like to show. B[0] gives the hue and B[1] is the alpha. Here, B[0] would be the same as A in the first example.



      I would like to write something like plt.imshow(B[0], cmap='jet', alpha=B[1]). But the value of the alpha has to be the same for the entire image, since the alpha option has to be a scalar or None



      With imshow, I can also specify an (M,N,3) or an (M,N,4) array, where the value for R,G,B and alpha are given. However, I don't know how to get the RGB values from my initial (M,N) sized array A.




      I tried setting the color with the HSV scheme from my values, then converting to RGB and plotting with those colors



      from matplotlib import colors

      B = np.random.rand(2,5,5)

      hue = B[0]
      sat = B[1]
      val = np.ones(B[0].shape)

      rgb = colors.hsv_to_rgb(np.array([hue, sat, val]).T)

      plt.imshow(rgb)
      plt.show()


      But then, I don't know how to make a color bar from the actual values in B.




      I'm going for something like this:
      Expected result
      where the vertical part of the colorbar shows the value in B[0] and the horizontal part of the colorbar shows the value in B[1].







      python matplotlib colors






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Mar 6 at 16:36









      usernumberusernumber

      308318




      308318






















          1 Answer
          1






          active

          oldest

          votes


















          1














          The first part is relatively straight forward:





          import numpy as np
          import matplotlib.pyplot as plt

          A = np.random.rand(5,5)
          cmap = plt.get_cmap('jet')

          rgba_img = cmap(A)
          rgba_img[:, :, 3] = np.random.rand(5, 5)

          plt.imshow(rgba_img)
          plt.colorbar()
          plt.show()


          Making a colorbar is more difficult. You will basically need to replace the pcolor that is used to make the colorbar with another one that looks as you want it to.






          share|improve this answer






















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            1 Answer
            1






            active

            oldest

            votes









            active

            oldest

            votes






            active

            oldest

            votes









            1














            The first part is relatively straight forward:





            import numpy as np
            import matplotlib.pyplot as plt

            A = np.random.rand(5,5)
            cmap = plt.get_cmap('jet')

            rgba_img = cmap(A)
            rgba_img[:, :, 3] = np.random.rand(5, 5)

            plt.imshow(rgba_img)
            plt.colorbar()
            plt.show()


            Making a colorbar is more difficult. You will basically need to replace the pcolor that is used to make the colorbar with another one that looks as you want it to.






            share|improve this answer



























              1














              The first part is relatively straight forward:





              import numpy as np
              import matplotlib.pyplot as plt

              A = np.random.rand(5,5)
              cmap = plt.get_cmap('jet')

              rgba_img = cmap(A)
              rgba_img[:, :, 3] = np.random.rand(5, 5)

              plt.imshow(rgba_img)
              plt.colorbar()
              plt.show()


              Making a colorbar is more difficult. You will basically need to replace the pcolor that is used to make the colorbar with another one that looks as you want it to.






              share|improve this answer

























                1












                1








                1







                The first part is relatively straight forward:





                import numpy as np
                import matplotlib.pyplot as plt

                A = np.random.rand(5,5)
                cmap = plt.get_cmap('jet')

                rgba_img = cmap(A)
                rgba_img[:, :, 3] = np.random.rand(5, 5)

                plt.imshow(rgba_img)
                plt.colorbar()
                plt.show()


                Making a colorbar is more difficult. You will basically need to replace the pcolor that is used to make the colorbar with another one that looks as you want it to.






                share|improve this answer













                The first part is relatively straight forward:





                import numpy as np
                import matplotlib.pyplot as plt

                A = np.random.rand(5,5)
                cmap = plt.get_cmap('jet')

                rgba_img = cmap(A)
                rgba_img[:, :, 3] = np.random.rand(5, 5)

                plt.imshow(rgba_img)
                plt.colorbar()
                plt.show()


                Making a colorbar is more difficult. You will basically need to replace the pcolor that is used to make the colorbar with another one that looks as you want it to.







                share|improve this answer












                share|improve this answer



                share|improve this answer










                answered Mar 6 at 18:51









                Jody KlymakJody Klymak

                1947




                1947





























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