Using non-square input matrix for convolutional autoencoder2019 Community Moderator ElectionConvolutional autoencoder not learning meaningful filterskeras autoencoder resource exhausted errorTraining Convolutional Autoencoder with KerasLoss is not decreasing for convolutional autoencoderKeras weight sharing and transposing the weight matrixValueError when training Autoencoder in Keras for unsupervised learningWhere to use dilated convolution in autoencoder for temporal data?How does MATLAB AutoEncoder scale data?Convolutional Autoencoder symmetrie model stacking

Professor being mistaken for a grad student

Are Roman Catholic priests ever addressed as pastor

Bacteria contamination inside a thermos bottle

Why does overlay work only on the first tcolorbox?

Most cost effective thermostat setting: consistent temperature vs. lowest temperature possible

Is there a symmetric-key algorithm which we can use for creating a signature?

et qui - how do you really understand that kind of phraseology?

Brexit - No Deal Rejection

New passport but visa is in old (lost) passport

How to terminate ping <dest> &

World War I as a war of liberals against authoritarians?

How are passwords stolen from companies if they only store hashes?

Did Ender ever learn that he killed Stilson and/or Bonzo?

What options are left, if Britain cannot decide?

Python if-else code style for reduced code for rounding floats

How to make healing in an exploration game interesting

Violin - Can double stops be played when the strings are not next to each other?

Can I use USB data pins as power source

Knife as defense against stray dogs

A single argument pattern definition applies to multiple-argument patterns?

Book about superhumans hiding among normal humans

A diagram about partial derivatives of f(x,y)

Adventure Game (text based) in C++

What are substitutions for coconut in curry?



Using non-square input matrix for convolutional autoencoder



2019 Community Moderator ElectionConvolutional autoencoder not learning meaningful filterskeras autoencoder resource exhausted errorTraining Convolutional Autoencoder with KerasLoss is not decreasing for convolutional autoencoderKeras weight sharing and transposing the weight matrixValueError when training Autoencoder in Keras for unsupervised learningWhere to use dilated convolution in autoencoder for temporal data?How does MATLAB AutoEncoder scale data?Convolutional Autoencoder symmetrie model stacking










0















Is it possible to train convolutional autoencoder (CAE) with non-square (rectangular) input matrix? All the tutorials and resources I have studied on CAE seems to use squared images. The data I am working with is not image. I have hundreds of single cells and for each cell there is a matrix (genomic data) with thousands of genes in rows and hundreds of bins in columns (genomic region of interest for each gene divided into the bins of equal size).



I have tried some models with Keras, but size of input in the encoder part of the model is always different than the size of output matrix in the decoder. So it is giving error. Can someone help me how to solve this problem?










share|improve this question




























    0















    Is it possible to train convolutional autoencoder (CAE) with non-square (rectangular) input matrix? All the tutorials and resources I have studied on CAE seems to use squared images. The data I am working with is not image. I have hundreds of single cells and for each cell there is a matrix (genomic data) with thousands of genes in rows and hundreds of bins in columns (genomic region of interest for each gene divided into the bins of equal size).



    I have tried some models with Keras, but size of input in the encoder part of the model is always different than the size of output matrix in the decoder. So it is giving error. Can someone help me how to solve this problem?










    share|improve this question


























      0












      0








      0








      Is it possible to train convolutional autoencoder (CAE) with non-square (rectangular) input matrix? All the tutorials and resources I have studied on CAE seems to use squared images. The data I am working with is not image. I have hundreds of single cells and for each cell there is a matrix (genomic data) with thousands of genes in rows and hundreds of bins in columns (genomic region of interest for each gene divided into the bins of equal size).



      I have tried some models with Keras, but size of input in the encoder part of the model is always different than the size of output matrix in the decoder. So it is giving error. Can someone help me how to solve this problem?










      share|improve this question
















      Is it possible to train convolutional autoencoder (CAE) with non-square (rectangular) input matrix? All the tutorials and resources I have studied on CAE seems to use squared images. The data I am working with is not image. I have hundreds of single cells and for each cell there is a matrix (genomic data) with thousands of genes in rows and hundreds of bins in columns (genomic region of interest for each gene divided into the bins of equal size).



      I have tried some models with Keras, but size of input in the encoder part of the model is always different than the size of output matrix in the decoder. So it is giving error. Can someone help me how to solve this problem?







      python keras deep-learning conv-neural-network autoencoder






      share|improve this question















      share|improve this question













      share|improve this question




      share|improve this question








      edited Mar 6 at 20:52







      Bahti

















      asked Mar 6 at 20:47









      BahtiBahti

      12




      12






















          0






          active

          oldest

          votes











          Your Answer






          StackExchange.ifUsing("editor", function ()
          StackExchange.using("externalEditor", function ()
          StackExchange.using("snippets", function ()
          StackExchange.snippets.init();
          );
          );
          , "code-snippets");

          StackExchange.ready(function()
          var channelOptions =
          tags: "".split(" "),
          id: "1"
          ;
          initTagRenderer("".split(" "), "".split(" "), channelOptions);

          StackExchange.using("externalEditor", function()
          // Have to fire editor after snippets, if snippets enabled
          if (StackExchange.settings.snippets.snippetsEnabled)
          StackExchange.using("snippets", function()
          createEditor();
          );

          else
          createEditor();

          );

          function createEditor()
          StackExchange.prepareEditor(
          heartbeatType: 'answer',
          autoActivateHeartbeat: false,
          convertImagesToLinks: true,
          noModals: true,
          showLowRepImageUploadWarning: true,
          reputationToPostImages: 10,
          bindNavPrevention: true,
          postfix: "",
          imageUploader:
          brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
          contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
          allowUrls: true
          ,
          onDemand: true,
          discardSelector: ".discard-answer"
          ,immediatelyShowMarkdownHelp:true
          );



          );













          draft saved

          draft discarded


















          StackExchange.ready(
          function ()
          StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f55031885%2fusing-non-square-input-matrix-for-convolutional-autoencoder%23new-answer', 'question_page');

          );

          Post as a guest















          Required, but never shown

























          0






          active

          oldest

          votes








          0






          active

          oldest

          votes









          active

          oldest

          votes






          active

          oldest

          votes















          draft saved

          draft discarded
















































          Thanks for contributing an answer to Stack Overflow!


          • Please be sure to answer the question. Provide details and share your research!

          But avoid


          • Asking for help, clarification, or responding to other answers.

          • Making statements based on opinion; back them up with references or personal experience.

          To learn more, see our tips on writing great answers.




          draft saved


          draft discarded














          StackExchange.ready(
          function ()
          StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f55031885%2fusing-non-square-input-matrix-for-convolutional-autoencoder%23new-answer', 'question_page');

          );

          Post as a guest















          Required, but never shown





















































          Required, but never shown














          Required, but never shown












          Required, but never shown







          Required, but never shown

































          Required, but never shown














          Required, but never shown












          Required, but never shown







          Required, but never shown







          Popular posts from this blog

          AWS Lex not identifying response if by a variable The 2019 Stack Overflow Developer Survey Results Are In Announcing the arrival of Valued Associate #679: Cesar Manara Planned maintenance scheduled April 17/18, 2019 at 00:00UTC (8:00pm US/Eastern) The Ask Question Wizard is Live! Data science time! April 2019 and salary with experienceEnforcing custom enumeration in AWS LEX for slot valuesHow to give response based on user response in Amazon Lex?Intercepting AWS Lambda Response to a AWS Lex QueryLex chat bot error: Reached second execution of fulfillment lambda on the same utteranceamazon lex showing invalid responseLambda response send back to Lex slot?Response card in Amazon lexAmazon Lex - Lambda response return HTML to botHow can I solve 424 (Failed Dependency) (python) obtained from Amazon lex?

          Алба-Юлія

          Захаров Федір Захарович