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unable to install rvest package
An error when install R package forecast on AWS instanceUnable to install package Stringrno_proxy and http_proxy while installing R packageInstallation of package ‘stringr’ had non-zero exit statusInstallation of packages ‘stringr’ and ‘stringi’ had non-zero exit statusInstalling “loo” package in R - source vs binary?Unable to install 'gdtools' package (I am using Red Hat 5.11)R can not install packages on centos 6.5R: install package tkrplot. Error message: ld: cannont find -lXssInstalling readtext package
.everyoneloves__top-leaderboard:empty,.everyoneloves__mid-leaderboard:empty,.everyoneloves__bot-mid-leaderboard:empty height:90px;width:728px;box-sizing:border-box;
I need to install rvest package for R version 3.1.2 (2014-10-31)
I get these errors:
checking whether the C++ compiler supports the long long type... no
*** stringi cannot be built. Upgrade your C++ compiler's settings
ERROR: configuration failed for package ‘stringi’
* removing ‘/usr/local/lib64/R/library/stringi’
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/usr/local/lib64/R/library/stringr’
ERROR: dependency ‘stringr’ is not available for package ‘httr’
* removing ‘/usr/local/lib64/R/library/httr’
ERROR: dependency ‘stringr’ is not available for package ‘selectr’
* removing ‘/usr/local/lib64/R/library/selectr’
ERROR: dependencies ‘httr’, ‘selectr’ are not available for package ‘rvest’
* removing ‘/usr/local/lib64/R/library/rvest’
Any ideas on how I could install R package rvest?
r rvest
|
show 2 more comments
I need to install rvest package for R version 3.1.2 (2014-10-31)
I get these errors:
checking whether the C++ compiler supports the long long type... no
*** stringi cannot be built. Upgrade your C++ compiler's settings
ERROR: configuration failed for package ‘stringi’
* removing ‘/usr/local/lib64/R/library/stringi’
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/usr/local/lib64/R/library/stringr’
ERROR: dependency ‘stringr’ is not available for package ‘httr’
* removing ‘/usr/local/lib64/R/library/httr’
ERROR: dependency ‘stringr’ is not available for package ‘selectr’
* removing ‘/usr/local/lib64/R/library/selectr’
ERROR: dependencies ‘httr’, ‘selectr’ are not available for package ‘rvest’
* removing ‘/usr/local/lib64/R/library/rvest’
Any ideas on how I could install R package rvest?
r rvest
1
are you installing from CRAN? What was the command you used?
– jeremycg
Jun 23 '15 at 16:59
1
install.packages("rvest")
– user1471980
Jun 23 '15 at 17:07
did you try updating whetherthe C++ compiler supports the long long type
?
– Aaron Katch
Jun 23 '15 at 17:20
@AaronKatch, I am not sure how to do that
– user1471980
Jun 23 '15 at 17:31
Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.
– 42-
Jun 23 '15 at 17:35
|
show 2 more comments
I need to install rvest package for R version 3.1.2 (2014-10-31)
I get these errors:
checking whether the C++ compiler supports the long long type... no
*** stringi cannot be built. Upgrade your C++ compiler's settings
ERROR: configuration failed for package ‘stringi’
* removing ‘/usr/local/lib64/R/library/stringi’
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/usr/local/lib64/R/library/stringr’
ERROR: dependency ‘stringr’ is not available for package ‘httr’
* removing ‘/usr/local/lib64/R/library/httr’
ERROR: dependency ‘stringr’ is not available for package ‘selectr’
* removing ‘/usr/local/lib64/R/library/selectr’
ERROR: dependencies ‘httr’, ‘selectr’ are not available for package ‘rvest’
* removing ‘/usr/local/lib64/R/library/rvest’
Any ideas on how I could install R package rvest?
r rvest
I need to install rvest package for R version 3.1.2 (2014-10-31)
I get these errors:
checking whether the C++ compiler supports the long long type... no
*** stringi cannot be built. Upgrade your C++ compiler's settings
ERROR: configuration failed for package ‘stringi’
* removing ‘/usr/local/lib64/R/library/stringi’
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/usr/local/lib64/R/library/stringr’
ERROR: dependency ‘stringr’ is not available for package ‘httr’
* removing ‘/usr/local/lib64/R/library/httr’
ERROR: dependency ‘stringr’ is not available for package ‘selectr’
* removing ‘/usr/local/lib64/R/library/selectr’
ERROR: dependencies ‘httr’, ‘selectr’ are not available for package ‘rvest’
* removing ‘/usr/local/lib64/R/library/rvest’
Any ideas on how I could install R package rvest?
r rvest
r rvest
edited Mar 8 at 1:59
JJJ
69611221
69611221
asked Jun 23 '15 at 16:54
user1471980user1471980
4,0072497171
4,0072497171
1
are you installing from CRAN? What was the command you used?
– jeremycg
Jun 23 '15 at 16:59
1
install.packages("rvest")
– user1471980
Jun 23 '15 at 17:07
did you try updating whetherthe C++ compiler supports the long long type
?
– Aaron Katch
Jun 23 '15 at 17:20
@AaronKatch, I am not sure how to do that
– user1471980
Jun 23 '15 at 17:31
Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.
– 42-
Jun 23 '15 at 17:35
|
show 2 more comments
1
are you installing from CRAN? What was the command you used?
– jeremycg
Jun 23 '15 at 16:59
1
install.packages("rvest")
– user1471980
Jun 23 '15 at 17:07
did you try updating whetherthe C++ compiler supports the long long type
?
– Aaron Katch
Jun 23 '15 at 17:20
@AaronKatch, I am not sure how to do that
– user1471980
Jun 23 '15 at 17:31
Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.
– 42-
Jun 23 '15 at 17:35
1
1
are you installing from CRAN? What was the command you used?
– jeremycg
Jun 23 '15 at 16:59
are you installing from CRAN? What was the command you used?
– jeremycg
Jun 23 '15 at 16:59
1
1
install.packages("rvest")
– user1471980
Jun 23 '15 at 17:07
install.packages("rvest")
– user1471980
Jun 23 '15 at 17:07
did you try updating whether
the C++ compiler supports the long long type
?– Aaron Katch
Jun 23 '15 at 17:20
did you try updating whether
the C++ compiler supports the long long type
?– Aaron Katch
Jun 23 '15 at 17:20
@AaronKatch, I am not sure how to do that
– user1471980
Jun 23 '15 at 17:31
@AaronKatch, I am not sure how to do that
– user1471980
Jun 23 '15 at 17:31
Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.
– 42-
Jun 23 '15 at 17:35
Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.
– 42-
Jun 23 '15 at 17:35
|
show 2 more comments
4 Answers
4
active
oldest
votes
My system is Ubuntu 14.04 with R:3.2.3, and I had the same problem.
Then I checked err meg and tried to install library of libcurl4-openssl-dev and libxml2-dev:
sudo apt-get install libcurl4-openssl-dev
sudo apt-get install libxml2-dev
After installed, install.packages("rvest")
was successful.
It's rvest not vrest
– SmallChess
Jan 4 '18 at 8:18
add a comment |
I need dependencies such as Rcurl, XML, rvest, xml2
, when I was trying to install tidyverse, DESeq2, RUVSeq
in Rstudio Version 1.1.456 on a fresh installed Ubuntu 18.04. Anyway, there are a bunch of missing dependencies. This answer might fit as a comment for Ubuntu 18.04, but I don't have that many reputation. Just try to make a summary of solutions work for Ubuntu 18.04 here.
In the terminal, run:
sudo apt-get install libcurl4-openssl-dev libssl-dev
sudo apt-get install libxml2-dev
Then within Rstudio,
install.packages("xml2")
install.packages("rvest")
install.packages("tidyverse") # might need other dependencies installed in Rstudio
tidyverse
get!
In the terminal:
sudo apt-get install libmysqlclient-dev ## for RMySQL
Then within the Rstudio
source("https://bioconductor.org/biocLite.R")
biocLite("DESeq2")
biocLite('RUVSeq') ## might have messages as following
installation path not writeable, unable to update packages: cluster, foreign, MASS, Matrix, mgcv, nlme, survival
In the terminal:
sudo R ## give R the root permission
## in the R session within the terminal
pks <- c('cluster', 'foreign', 'MASS', 'Matrix', 'mgcv', 'nlme', 'survival')
install.packages(pks)
q()
That's my experience. Hope this one has good Generalizability.
add a comment |
I was able to build the stringi package as this:
install.packages('stringi', configure.args='--disable-cxx11')
Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.
– Dirk Eddelbuettel
Jun 23 '15 at 18:45
add a comment |
My answer is definitely late to this question. Nevertheless, somebody may find it useful.
I run into the same problem so I run this command on the shell:
sudo apt-get upgrade pkg-config
It worked for me.
add a comment |
Your Answer
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4 Answers
4
active
oldest
votes
4 Answers
4
active
oldest
votes
active
oldest
votes
active
oldest
votes
My system is Ubuntu 14.04 with R:3.2.3, and I had the same problem.
Then I checked err meg and tried to install library of libcurl4-openssl-dev and libxml2-dev:
sudo apt-get install libcurl4-openssl-dev
sudo apt-get install libxml2-dev
After installed, install.packages("rvest")
was successful.
It's rvest not vrest
– SmallChess
Jan 4 '18 at 8:18
add a comment |
My system is Ubuntu 14.04 with R:3.2.3, and I had the same problem.
Then I checked err meg and tried to install library of libcurl4-openssl-dev and libxml2-dev:
sudo apt-get install libcurl4-openssl-dev
sudo apt-get install libxml2-dev
After installed, install.packages("rvest")
was successful.
It's rvest not vrest
– SmallChess
Jan 4 '18 at 8:18
add a comment |
My system is Ubuntu 14.04 with R:3.2.3, and I had the same problem.
Then I checked err meg and tried to install library of libcurl4-openssl-dev and libxml2-dev:
sudo apt-get install libcurl4-openssl-dev
sudo apt-get install libxml2-dev
After installed, install.packages("rvest")
was successful.
My system is Ubuntu 14.04 with R:3.2.3, and I had the same problem.
Then I checked err meg and tried to install library of libcurl4-openssl-dev and libxml2-dev:
sudo apt-get install libcurl4-openssl-dev
sudo apt-get install libxml2-dev
After installed, install.packages("rvest")
was successful.
edited Apr 18 '18 at 3:49
Jilber Urbina
43.5k484114
43.5k484114
answered Dec 15 '15 at 16:30
NoahCNoahC
31124
31124
It's rvest not vrest
– SmallChess
Jan 4 '18 at 8:18
add a comment |
It's rvest not vrest
– SmallChess
Jan 4 '18 at 8:18
It's rvest not vrest
– SmallChess
Jan 4 '18 at 8:18
It's rvest not vrest
– SmallChess
Jan 4 '18 at 8:18
add a comment |
I need dependencies such as Rcurl, XML, rvest, xml2
, when I was trying to install tidyverse, DESeq2, RUVSeq
in Rstudio Version 1.1.456 on a fresh installed Ubuntu 18.04. Anyway, there are a bunch of missing dependencies. This answer might fit as a comment for Ubuntu 18.04, but I don't have that many reputation. Just try to make a summary of solutions work for Ubuntu 18.04 here.
In the terminal, run:
sudo apt-get install libcurl4-openssl-dev libssl-dev
sudo apt-get install libxml2-dev
Then within Rstudio,
install.packages("xml2")
install.packages("rvest")
install.packages("tidyverse") # might need other dependencies installed in Rstudio
tidyverse
get!
In the terminal:
sudo apt-get install libmysqlclient-dev ## for RMySQL
Then within the Rstudio
source("https://bioconductor.org/biocLite.R")
biocLite("DESeq2")
biocLite('RUVSeq') ## might have messages as following
installation path not writeable, unable to update packages: cluster, foreign, MASS, Matrix, mgcv, nlme, survival
In the terminal:
sudo R ## give R the root permission
## in the R session within the terminal
pks <- c('cluster', 'foreign', 'MASS', 'Matrix', 'mgcv', 'nlme', 'survival')
install.packages(pks)
q()
That's my experience. Hope this one has good Generalizability.
add a comment |
I need dependencies such as Rcurl, XML, rvest, xml2
, when I was trying to install tidyverse, DESeq2, RUVSeq
in Rstudio Version 1.1.456 on a fresh installed Ubuntu 18.04. Anyway, there are a bunch of missing dependencies. This answer might fit as a comment for Ubuntu 18.04, but I don't have that many reputation. Just try to make a summary of solutions work for Ubuntu 18.04 here.
In the terminal, run:
sudo apt-get install libcurl4-openssl-dev libssl-dev
sudo apt-get install libxml2-dev
Then within Rstudio,
install.packages("xml2")
install.packages("rvest")
install.packages("tidyverse") # might need other dependencies installed in Rstudio
tidyverse
get!
In the terminal:
sudo apt-get install libmysqlclient-dev ## for RMySQL
Then within the Rstudio
source("https://bioconductor.org/biocLite.R")
biocLite("DESeq2")
biocLite('RUVSeq') ## might have messages as following
installation path not writeable, unable to update packages: cluster, foreign, MASS, Matrix, mgcv, nlme, survival
In the terminal:
sudo R ## give R the root permission
## in the R session within the terminal
pks <- c('cluster', 'foreign', 'MASS', 'Matrix', 'mgcv', 'nlme', 'survival')
install.packages(pks)
q()
That's my experience. Hope this one has good Generalizability.
add a comment |
I need dependencies such as Rcurl, XML, rvest, xml2
, when I was trying to install tidyverse, DESeq2, RUVSeq
in Rstudio Version 1.1.456 on a fresh installed Ubuntu 18.04. Anyway, there are a bunch of missing dependencies. This answer might fit as a comment for Ubuntu 18.04, but I don't have that many reputation. Just try to make a summary of solutions work for Ubuntu 18.04 here.
In the terminal, run:
sudo apt-get install libcurl4-openssl-dev libssl-dev
sudo apt-get install libxml2-dev
Then within Rstudio,
install.packages("xml2")
install.packages("rvest")
install.packages("tidyverse") # might need other dependencies installed in Rstudio
tidyverse
get!
In the terminal:
sudo apt-get install libmysqlclient-dev ## for RMySQL
Then within the Rstudio
source("https://bioconductor.org/biocLite.R")
biocLite("DESeq2")
biocLite('RUVSeq') ## might have messages as following
installation path not writeable, unable to update packages: cluster, foreign, MASS, Matrix, mgcv, nlme, survival
In the terminal:
sudo R ## give R the root permission
## in the R session within the terminal
pks <- c('cluster', 'foreign', 'MASS', 'Matrix', 'mgcv', 'nlme', 'survival')
install.packages(pks)
q()
That's my experience. Hope this one has good Generalizability.
I need dependencies such as Rcurl, XML, rvest, xml2
, when I was trying to install tidyverse, DESeq2, RUVSeq
in Rstudio Version 1.1.456 on a fresh installed Ubuntu 18.04. Anyway, there are a bunch of missing dependencies. This answer might fit as a comment for Ubuntu 18.04, but I don't have that many reputation. Just try to make a summary of solutions work for Ubuntu 18.04 here.
In the terminal, run:
sudo apt-get install libcurl4-openssl-dev libssl-dev
sudo apt-get install libxml2-dev
Then within Rstudio,
install.packages("xml2")
install.packages("rvest")
install.packages("tidyverse") # might need other dependencies installed in Rstudio
tidyverse
get!
In the terminal:
sudo apt-get install libmysqlclient-dev ## for RMySQL
Then within the Rstudio
source("https://bioconductor.org/biocLite.R")
biocLite("DESeq2")
biocLite('RUVSeq') ## might have messages as following
installation path not writeable, unable to update packages: cluster, foreign, MASS, Matrix, mgcv, nlme, survival
In the terminal:
sudo R ## give R the root permission
## in the R session within the terminal
pks <- c('cluster', 'foreign', 'MASS', 'Matrix', 'mgcv', 'nlme', 'survival')
install.packages(pks)
q()
That's my experience. Hope this one has good Generalizability.
answered Aug 7 '18 at 4:58
Guannan ShenGuannan Shen
794
794
add a comment |
add a comment |
I was able to build the stringi package as this:
install.packages('stringi', configure.args='--disable-cxx11')
Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.
– Dirk Eddelbuettel
Jun 23 '15 at 18:45
add a comment |
I was able to build the stringi package as this:
install.packages('stringi', configure.args='--disable-cxx11')
Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.
– Dirk Eddelbuettel
Jun 23 '15 at 18:45
add a comment |
I was able to build the stringi package as this:
install.packages('stringi', configure.args='--disable-cxx11')
I was able to build the stringi package as this:
install.packages('stringi', configure.args='--disable-cxx11')
answered Jun 23 '15 at 18:40
user1471980user1471980
4,0072497171
4,0072497171
Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.
– Dirk Eddelbuettel
Jun 23 '15 at 18:45
add a comment |
Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.
– Dirk Eddelbuettel
Jun 23 '15 at 18:45
Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.
– Dirk Eddelbuettel
Jun 23 '15 at 18:45
Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.
– Dirk Eddelbuettel
Jun 23 '15 at 18:45
add a comment |
My answer is definitely late to this question. Nevertheless, somebody may find it useful.
I run into the same problem so I run this command on the shell:
sudo apt-get upgrade pkg-config
It worked for me.
add a comment |
My answer is definitely late to this question. Nevertheless, somebody may find it useful.
I run into the same problem so I run this command on the shell:
sudo apt-get upgrade pkg-config
It worked for me.
add a comment |
My answer is definitely late to this question. Nevertheless, somebody may find it useful.
I run into the same problem so I run this command on the shell:
sudo apt-get upgrade pkg-config
It worked for me.
My answer is definitely late to this question. Nevertheless, somebody may find it useful.
I run into the same problem so I run this command on the shell:
sudo apt-get upgrade pkg-config
It worked for me.
answered Dec 26 '17 at 17:04
KHELIFI Abdellah SayedKHELIFI Abdellah Sayed
63
63
add a comment |
add a comment |
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1
are you installing from CRAN? What was the command you used?
– jeremycg
Jun 23 '15 at 16:59
1
install.packages("rvest")
– user1471980
Jun 23 '15 at 17:07
did you try updating whether
the C++ compiler supports the long long type
?– Aaron Katch
Jun 23 '15 at 17:20
@AaronKatch, I am not sure how to do that
– user1471980
Jun 23 '15 at 17:31
Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.
– 42-
Jun 23 '15 at 17:35