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unable to install rvest package


An error when install R package forecast on AWS instanceUnable to install package Stringrno_proxy and http_proxy while installing R packageInstallation of package ‘stringr’ had non-zero exit statusInstallation of packages ‘stringr’ and ‘stringi’ had non-zero exit statusInstalling “loo” package in R - source vs binary?Unable to install 'gdtools' package (I am using Red Hat 5.11)R can not install packages on centos 6.5R: install package tkrplot. Error message: ld: cannont find -lXssInstalling readtext package






.everyoneloves__top-leaderboard:empty,.everyoneloves__mid-leaderboard:empty,.everyoneloves__bot-mid-leaderboard:empty height:90px;width:728px;box-sizing:border-box;








8















I need to install rvest package for R version 3.1.2 (2014-10-31)



I get these errors:



 checking whether the C++ compiler supports the long long type... no
*** stringi cannot be built. Upgrade your C++ compiler's settings
ERROR: configuration failed for package ‘stringi’
* removing ‘/usr/local/lib64/R/library/stringi’
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/usr/local/lib64/R/library/stringr’
ERROR: dependency ‘stringr’ is not available for package ‘httr’
* removing ‘/usr/local/lib64/R/library/httr’
ERROR: dependency ‘stringr’ is not available for package ‘selectr’
* removing ‘/usr/local/lib64/R/library/selectr’
ERROR: dependencies ‘httr’, ‘selectr’ are not available for package ‘rvest’
* removing ‘/usr/local/lib64/R/library/rvest’


Any ideas on how I could install R package rvest?










share|improve this question



















  • 1





    are you installing from CRAN? What was the command you used?

    – jeremycg
    Jun 23 '15 at 16:59






  • 1





    install.packages("rvest")

    – user1471980
    Jun 23 '15 at 17:07











  • did you try updating whether the C++ compiler supports the long long type?

    – Aaron Katch
    Jun 23 '15 at 17:20












  • @AaronKatch, I am not sure how to do that

    – user1471980
    Jun 23 '15 at 17:31











  • Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.

    – 42-
    Jun 23 '15 at 17:35

















8















I need to install rvest package for R version 3.1.2 (2014-10-31)



I get these errors:



 checking whether the C++ compiler supports the long long type... no
*** stringi cannot be built. Upgrade your C++ compiler's settings
ERROR: configuration failed for package ‘stringi’
* removing ‘/usr/local/lib64/R/library/stringi’
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/usr/local/lib64/R/library/stringr’
ERROR: dependency ‘stringr’ is not available for package ‘httr’
* removing ‘/usr/local/lib64/R/library/httr’
ERROR: dependency ‘stringr’ is not available for package ‘selectr’
* removing ‘/usr/local/lib64/R/library/selectr’
ERROR: dependencies ‘httr’, ‘selectr’ are not available for package ‘rvest’
* removing ‘/usr/local/lib64/R/library/rvest’


Any ideas on how I could install R package rvest?










share|improve this question



















  • 1





    are you installing from CRAN? What was the command you used?

    – jeremycg
    Jun 23 '15 at 16:59






  • 1





    install.packages("rvest")

    – user1471980
    Jun 23 '15 at 17:07











  • did you try updating whether the C++ compiler supports the long long type?

    – Aaron Katch
    Jun 23 '15 at 17:20












  • @AaronKatch, I am not sure how to do that

    – user1471980
    Jun 23 '15 at 17:31











  • Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.

    – 42-
    Jun 23 '15 at 17:35













8












8








8


1






I need to install rvest package for R version 3.1.2 (2014-10-31)



I get these errors:



 checking whether the C++ compiler supports the long long type... no
*** stringi cannot be built. Upgrade your C++ compiler's settings
ERROR: configuration failed for package ‘stringi’
* removing ‘/usr/local/lib64/R/library/stringi’
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/usr/local/lib64/R/library/stringr’
ERROR: dependency ‘stringr’ is not available for package ‘httr’
* removing ‘/usr/local/lib64/R/library/httr’
ERROR: dependency ‘stringr’ is not available for package ‘selectr’
* removing ‘/usr/local/lib64/R/library/selectr’
ERROR: dependencies ‘httr’, ‘selectr’ are not available for package ‘rvest’
* removing ‘/usr/local/lib64/R/library/rvest’


Any ideas on how I could install R package rvest?










share|improve this question
















I need to install rvest package for R version 3.1.2 (2014-10-31)



I get these errors:



 checking whether the C++ compiler supports the long long type... no
*** stringi cannot be built. Upgrade your C++ compiler's settings
ERROR: configuration failed for package ‘stringi’
* removing ‘/usr/local/lib64/R/library/stringi’
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/usr/local/lib64/R/library/stringr’
ERROR: dependency ‘stringr’ is not available for package ‘httr’
* removing ‘/usr/local/lib64/R/library/httr’
ERROR: dependency ‘stringr’ is not available for package ‘selectr’
* removing ‘/usr/local/lib64/R/library/selectr’
ERROR: dependencies ‘httr’, ‘selectr’ are not available for package ‘rvest’
* removing ‘/usr/local/lib64/R/library/rvest’


Any ideas on how I could install R package rvest?







r rvest






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Mar 8 at 1:59









JJJ

69611221




69611221










asked Jun 23 '15 at 16:54









user1471980user1471980

4,0072497171




4,0072497171







  • 1





    are you installing from CRAN? What was the command you used?

    – jeremycg
    Jun 23 '15 at 16:59






  • 1





    install.packages("rvest")

    – user1471980
    Jun 23 '15 at 17:07











  • did you try updating whether the C++ compiler supports the long long type?

    – Aaron Katch
    Jun 23 '15 at 17:20












  • @AaronKatch, I am not sure how to do that

    – user1471980
    Jun 23 '15 at 17:31











  • Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.

    – 42-
    Jun 23 '15 at 17:35












  • 1





    are you installing from CRAN? What was the command you used?

    – jeremycg
    Jun 23 '15 at 16:59






  • 1





    install.packages("rvest")

    – user1471980
    Jun 23 '15 at 17:07











  • did you try updating whether the C++ compiler supports the long long type?

    – Aaron Katch
    Jun 23 '15 at 17:20












  • @AaronKatch, I am not sure how to do that

    – user1471980
    Jun 23 '15 at 17:31











  • Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.

    – 42-
    Jun 23 '15 at 17:35







1




1





are you installing from CRAN? What was the command you used?

– jeremycg
Jun 23 '15 at 16:59





are you installing from CRAN? What was the command you used?

– jeremycg
Jun 23 '15 at 16:59




1




1





install.packages("rvest")

– user1471980
Jun 23 '15 at 17:07





install.packages("rvest")

– user1471980
Jun 23 '15 at 17:07













did you try updating whether the C++ compiler supports the long long type?

– Aaron Katch
Jun 23 '15 at 17:20






did you try updating whether the C++ compiler supports the long long type?

– Aaron Katch
Jun 23 '15 at 17:20














@AaronKatch, I am not sure how to do that

– user1471980
Jun 23 '15 at 17:31





@AaronKatch, I am not sure how to do that

– user1471980
Jun 23 '15 at 17:31













Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.

– 42-
Jun 23 '15 at 17:35





Since you are using an out-of-date version of R, you will need to be compiling from package versions that match the old version and you will need to be using development versions of R and supporting tools since the headers are sometimes missing in the base distributions.

– 42-
Jun 23 '15 at 17:35












4 Answers
4






active

oldest

votes


















21














My system is Ubuntu 14.04 with R:3.2.3, and I had the same problem.



Then I checked err meg and tried to install library of libcurl4-openssl-dev and libxml2-dev:



sudo apt-get install libcurl4-openssl-dev

sudo apt-get install libxml2-dev


After installed, install.packages("rvest") was successful.






share|improve this answer

























  • It's rvest not vrest

    – SmallChess
    Jan 4 '18 at 8:18


















3














I need dependencies such as Rcurl, XML, rvest, xml2, when I was trying to install tidyverse, DESeq2, RUVSeq in Rstudio Version 1.1.456 on a fresh installed Ubuntu 18.04. Anyway, there are a bunch of missing dependencies. This answer might fit as a comment for Ubuntu 18.04, but I don't have that many reputation. Just try to make a summary of solutions work for Ubuntu 18.04 here.

In the terminal, run:



 sudo apt-get install libcurl4-openssl-dev libssl-dev
sudo apt-get install libxml2-dev


Then within Rstudio,



install.packages("xml2")
install.packages("rvest")
install.packages("tidyverse") # might need other dependencies installed in Rstudio


tidyverse get!

In the terminal:



sudo apt-get install libmysqlclient-dev ## for RMySQL


Then within the Rstudio



source("https://bioconductor.org/biocLite.R")
biocLite("DESeq2")
biocLite('RUVSeq') ## might have messages as following


installation path not writeable, unable to update packages: cluster, foreign, MASS, Matrix, mgcv, nlme, survival



In the terminal:



sudo R ## give R the root permission
## in the R session within the terminal
pks <- c('cluster', 'foreign', 'MASS', 'Matrix', 'mgcv', 'nlme', 'survival')
install.packages(pks)
q()


That's my experience. Hope this one has good Generalizability.






share|improve this answer






























    2














    I was able to build the stringi package as this:



    install.packages('stringi', configure.args='--disable-cxx11')





    share|improve this answer























    • Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.

      – Dirk Eddelbuettel
      Jun 23 '15 at 18:45


















    0














    My answer is definitely late to this question. Nevertheless, somebody may find it useful.



    I run into the same problem so I run this command on the shell:



    sudo apt-get upgrade pkg-config


    It worked for me.






    share|improve this answer























      Your Answer






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      4 Answers
      4






      active

      oldest

      votes








      4 Answers
      4






      active

      oldest

      votes









      active

      oldest

      votes






      active

      oldest

      votes









      21














      My system is Ubuntu 14.04 with R:3.2.3, and I had the same problem.



      Then I checked err meg and tried to install library of libcurl4-openssl-dev and libxml2-dev:



      sudo apt-get install libcurl4-openssl-dev

      sudo apt-get install libxml2-dev


      After installed, install.packages("rvest") was successful.






      share|improve this answer

























      • It's rvest not vrest

        – SmallChess
        Jan 4 '18 at 8:18















      21














      My system is Ubuntu 14.04 with R:3.2.3, and I had the same problem.



      Then I checked err meg and tried to install library of libcurl4-openssl-dev and libxml2-dev:



      sudo apt-get install libcurl4-openssl-dev

      sudo apt-get install libxml2-dev


      After installed, install.packages("rvest") was successful.






      share|improve this answer

























      • It's rvest not vrest

        – SmallChess
        Jan 4 '18 at 8:18













      21












      21








      21







      My system is Ubuntu 14.04 with R:3.2.3, and I had the same problem.



      Then I checked err meg and tried to install library of libcurl4-openssl-dev and libxml2-dev:



      sudo apt-get install libcurl4-openssl-dev

      sudo apt-get install libxml2-dev


      After installed, install.packages("rvest") was successful.






      share|improve this answer















      My system is Ubuntu 14.04 with R:3.2.3, and I had the same problem.



      Then I checked err meg and tried to install library of libcurl4-openssl-dev and libxml2-dev:



      sudo apt-get install libcurl4-openssl-dev

      sudo apt-get install libxml2-dev


      After installed, install.packages("rvest") was successful.







      share|improve this answer














      share|improve this answer



      share|improve this answer








      edited Apr 18 '18 at 3:49









      Jilber Urbina

      43.5k484114




      43.5k484114










      answered Dec 15 '15 at 16:30









      NoahCNoahC

      31124




      31124












      • It's rvest not vrest

        – SmallChess
        Jan 4 '18 at 8:18

















      • It's rvest not vrest

        – SmallChess
        Jan 4 '18 at 8:18
















      It's rvest not vrest

      – SmallChess
      Jan 4 '18 at 8:18





      It's rvest not vrest

      – SmallChess
      Jan 4 '18 at 8:18













      3














      I need dependencies such as Rcurl, XML, rvest, xml2, when I was trying to install tidyverse, DESeq2, RUVSeq in Rstudio Version 1.1.456 on a fresh installed Ubuntu 18.04. Anyway, there are a bunch of missing dependencies. This answer might fit as a comment for Ubuntu 18.04, but I don't have that many reputation. Just try to make a summary of solutions work for Ubuntu 18.04 here.

      In the terminal, run:



       sudo apt-get install libcurl4-openssl-dev libssl-dev
      sudo apt-get install libxml2-dev


      Then within Rstudio,



      install.packages("xml2")
      install.packages("rvest")
      install.packages("tidyverse") # might need other dependencies installed in Rstudio


      tidyverse get!

      In the terminal:



      sudo apt-get install libmysqlclient-dev ## for RMySQL


      Then within the Rstudio



      source("https://bioconductor.org/biocLite.R")
      biocLite("DESeq2")
      biocLite('RUVSeq') ## might have messages as following


      installation path not writeable, unable to update packages: cluster, foreign, MASS, Matrix, mgcv, nlme, survival



      In the terminal:



      sudo R ## give R the root permission
      ## in the R session within the terminal
      pks <- c('cluster', 'foreign', 'MASS', 'Matrix', 'mgcv', 'nlme', 'survival')
      install.packages(pks)
      q()


      That's my experience. Hope this one has good Generalizability.






      share|improve this answer



























        3














        I need dependencies such as Rcurl, XML, rvest, xml2, when I was trying to install tidyverse, DESeq2, RUVSeq in Rstudio Version 1.1.456 on a fresh installed Ubuntu 18.04. Anyway, there are a bunch of missing dependencies. This answer might fit as a comment for Ubuntu 18.04, but I don't have that many reputation. Just try to make a summary of solutions work for Ubuntu 18.04 here.

        In the terminal, run:



         sudo apt-get install libcurl4-openssl-dev libssl-dev
        sudo apt-get install libxml2-dev


        Then within Rstudio,



        install.packages("xml2")
        install.packages("rvest")
        install.packages("tidyverse") # might need other dependencies installed in Rstudio


        tidyverse get!

        In the terminal:



        sudo apt-get install libmysqlclient-dev ## for RMySQL


        Then within the Rstudio



        source("https://bioconductor.org/biocLite.R")
        biocLite("DESeq2")
        biocLite('RUVSeq') ## might have messages as following


        installation path not writeable, unable to update packages: cluster, foreign, MASS, Matrix, mgcv, nlme, survival



        In the terminal:



        sudo R ## give R the root permission
        ## in the R session within the terminal
        pks <- c('cluster', 'foreign', 'MASS', 'Matrix', 'mgcv', 'nlme', 'survival')
        install.packages(pks)
        q()


        That's my experience. Hope this one has good Generalizability.






        share|improve this answer

























          3












          3








          3







          I need dependencies such as Rcurl, XML, rvest, xml2, when I was trying to install tidyverse, DESeq2, RUVSeq in Rstudio Version 1.1.456 on a fresh installed Ubuntu 18.04. Anyway, there are a bunch of missing dependencies. This answer might fit as a comment for Ubuntu 18.04, but I don't have that many reputation. Just try to make a summary of solutions work for Ubuntu 18.04 here.

          In the terminal, run:



           sudo apt-get install libcurl4-openssl-dev libssl-dev
          sudo apt-get install libxml2-dev


          Then within Rstudio,



          install.packages("xml2")
          install.packages("rvest")
          install.packages("tidyverse") # might need other dependencies installed in Rstudio


          tidyverse get!

          In the terminal:



          sudo apt-get install libmysqlclient-dev ## for RMySQL


          Then within the Rstudio



          source("https://bioconductor.org/biocLite.R")
          biocLite("DESeq2")
          biocLite('RUVSeq') ## might have messages as following


          installation path not writeable, unable to update packages: cluster, foreign, MASS, Matrix, mgcv, nlme, survival



          In the terminal:



          sudo R ## give R the root permission
          ## in the R session within the terminal
          pks <- c('cluster', 'foreign', 'MASS', 'Matrix', 'mgcv', 'nlme', 'survival')
          install.packages(pks)
          q()


          That's my experience. Hope this one has good Generalizability.






          share|improve this answer













          I need dependencies such as Rcurl, XML, rvest, xml2, when I was trying to install tidyverse, DESeq2, RUVSeq in Rstudio Version 1.1.456 on a fresh installed Ubuntu 18.04. Anyway, there are a bunch of missing dependencies. This answer might fit as a comment for Ubuntu 18.04, but I don't have that many reputation. Just try to make a summary of solutions work for Ubuntu 18.04 here.

          In the terminal, run:



           sudo apt-get install libcurl4-openssl-dev libssl-dev
          sudo apt-get install libxml2-dev


          Then within Rstudio,



          install.packages("xml2")
          install.packages("rvest")
          install.packages("tidyverse") # might need other dependencies installed in Rstudio


          tidyverse get!

          In the terminal:



          sudo apt-get install libmysqlclient-dev ## for RMySQL


          Then within the Rstudio



          source("https://bioconductor.org/biocLite.R")
          biocLite("DESeq2")
          biocLite('RUVSeq') ## might have messages as following


          installation path not writeable, unable to update packages: cluster, foreign, MASS, Matrix, mgcv, nlme, survival



          In the terminal:



          sudo R ## give R the root permission
          ## in the R session within the terminal
          pks <- c('cluster', 'foreign', 'MASS', 'Matrix', 'mgcv', 'nlme', 'survival')
          install.packages(pks)
          q()


          That's my experience. Hope this one has good Generalizability.







          share|improve this answer












          share|improve this answer



          share|improve this answer










          answered Aug 7 '18 at 4:58









          Guannan ShenGuannan Shen

          794




          794





















              2














              I was able to build the stringi package as this:



              install.packages('stringi', configure.args='--disable-cxx11')





              share|improve this answer























              • Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.

                – Dirk Eddelbuettel
                Jun 23 '15 at 18:45















              2














              I was able to build the stringi package as this:



              install.packages('stringi', configure.args='--disable-cxx11')





              share|improve this answer























              • Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.

                – Dirk Eddelbuettel
                Jun 23 '15 at 18:45













              2












              2








              2







              I was able to build the stringi package as this:



              install.packages('stringi', configure.args='--disable-cxx11')





              share|improve this answer













              I was able to build the stringi package as this:



              install.packages('stringi', configure.args='--disable-cxx11')






              share|improve this answer












              share|improve this answer



              share|improve this answer










              answered Jun 23 '15 at 18:40









              user1471980user1471980

              4,0072497171




              4,0072497171












              • Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.

                – Dirk Eddelbuettel
                Jun 23 '15 at 18:45

















              • Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.

                – Dirk Eddelbuettel
                Jun 23 '15 at 18:45
















              Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.

              – Dirk Eddelbuettel
              Jun 23 '15 at 18:45





              Good, but file a ticket with stringi as it should (ideally) do that automagically when an insufficient compiler is found.

              – Dirk Eddelbuettel
              Jun 23 '15 at 18:45











              0














              My answer is definitely late to this question. Nevertheless, somebody may find it useful.



              I run into the same problem so I run this command on the shell:



              sudo apt-get upgrade pkg-config


              It worked for me.






              share|improve this answer



























                0














                My answer is definitely late to this question. Nevertheless, somebody may find it useful.



                I run into the same problem so I run this command on the shell:



                sudo apt-get upgrade pkg-config


                It worked for me.






                share|improve this answer

























                  0












                  0








                  0







                  My answer is definitely late to this question. Nevertheless, somebody may find it useful.



                  I run into the same problem so I run this command on the shell:



                  sudo apt-get upgrade pkg-config


                  It worked for me.






                  share|improve this answer













                  My answer is definitely late to this question. Nevertheless, somebody may find it useful.



                  I run into the same problem so I run this command on the shell:



                  sudo apt-get upgrade pkg-config


                  It worked for me.







                  share|improve this answer












                  share|improve this answer



                  share|improve this answer










                  answered Dec 26 '17 at 17:04









                  KHELIFI Abdellah SayedKHELIFI Abdellah Sayed

                  63




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